Complete List of Publications by HY HE on Pubmed Central
        (§: Co-first authors; &: GU graduate student; #: Undergraduate student authors *: Corresponding author)
  • Lin JM#, Konadu BB&, Trader DJ, He HY*. In Vivo Time-Lapse Imaging Reveals Differential Activity-Induced Regulation of Proteasome Activity in Subcellular Regions of the Optic Tectum in Xenopus laevis Tadpoles. ACS Chem Neurosci. 2026 Apr 14. doi: 10.1021/acschemneuro.5c00881. Epub ahead of print. PMID: 41978499.
  • ​​Ahsan A&, Bera R, Konadu BB&, Gao Y, He HY*. Protocol for in vivo BONCAT labeling of nascent proteins in Xenopus laevis tadpole brains with high temporal precision for quantitative analysis. STAR Protoc. 2025 Sep 15;6(4):104086. doi: 10.1016/j.xpro.2025.104086.
  • Bullard M§&, Martinez-Cervantes JC§&, Quaicoe NB#, Jin A#, Adams A#, Lin JM#, Iliadis E#, Seidler TM#, Cervantes-Sandoval I, He HY*. Accelerated protein retention expansion microscopy using microwave radiation. Cell Reports Methods. 2024 Nov 19:100907. doi: 10.1016/j.crmeth.2024.100907.  
  • Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, Bouchard KE, Gu L, Cai W, Ji S, Roysam B, Wang CW, Yu H, Sironi A, Iascone DM, Zhou J, Bas E, Conde-Sousa E, Aguiar P, Li X, Li Y, Nanda S, Wang Y, Muresan L, Fua P, Ye B, He HY, Staiger JF, Peter M, Cox DN, Simonneau M, Oberlaender M, Jefferis G, Ito K, Gonzalez-Bellido P, Kim J, Rubel E, Cline HT, Zeng H, Nern A, Chiang AS, Yao J, Roskams J, Livesey R, Stevens J, Liu T, Dang C, Guo Y, Zhong N, Tourassi G, Hill S, Hawrylycz M, Koch C, Meijering E, Ascoli GA, Peng H. BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets. Nat Methods. 2023 Jun;20(6):824-835. doi: 10.1038/s41592-023-01848-5.
  • He HY*, Ahsan A&, Bera R, McLain N, Faulkner R, Ramachandran KV, Margolis SS, Cline HT*. (2023) Neuronal membrane proteasomes regulate neuronal circuit activity in vivo and are required for learning-induced behavioral plasticity. Proc Natl Acad Sci U S A. 2023 Jan 17;120(3):e2216537120. doi: 10.1073/pnas.2216537120. PMID: 36630455. (*: Corresponding authors)
  • Schiapparelli LM, Sharma P, He HY, Li J, Shah SH, McClatchy DB, Ma Y, Liu HH, Goldberg JL, Yates JR 3rd, Cline HT. (2022) Proteomic screen reveals diverse protein transport between connected neurons in the visual system. Cell Rep. doi: 10.1016/j.celrep.2021.110287. 
  • ​He HY*, Lin CY, Cline HT. (2021) In Vivo Time-Lapse Imaging and Analysis of Dendritic Structural Plasticity in Xenopus laevis Tadpoles. Cold Spring Harb Protoc. doi: 10.1101/pdb.prot106781. (*: Corresponding author)
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  • He HY, Cline HT. (2019) What is excitation/inhibition and how is it regulated? A case of the elephant and the wisemen. J Exp Neurosci. 13:1179069519859371. 
  • He HY*, Shen W*, Zheng L, Guo X, Cline HT. (2018) Excitatory synaptic dysfunction cell-autonomously decreases inhibitory inputs and disrupts structural and functional plasticity. Nat. Commun. 9(1):2893. (*: co-first authors)
  • ​He HY, Shen W, Hiramoto M, Cline HT. (2016) Experience-dependent bimodal plasticity of inhibitory neurons in early development. Neuron. 90(6):1203-14.
  • Shen W, Liu HH, Schiapparelli L, McClatchy D, He HY, Yates JR 3rd, Cline HT. (2014) Acute synthesis of CPEB is required for plasticity of visual avoidance behavior in Xenopus. Cell Rep. 6(4):737-47.
  • Lee PC*, He HY*, Lin CY, Ching YT, Cline HT. (2013) Computer aided alignment and quantitative analysis of dynamic 4D neuronal structures. Neuroinformatics. 11: 249-257. (*: co-first authors)
  • He HY, Cline HT. (2011) Diadem X: Automated 4-Dimensional Analysis of Morphological Data.  Neuroinformatics. 9(2-3):107-12.
  • Shen W, Da Silva JS, He H, Cline HT. (2009) Type A GABA-receptor-dependent synaptic transmission sculpts dendritic arbor structure in Xenopus tadpoles in vivo. J Neurosci. 29: 5032-43.
  • He HY, Ray B, Dennis K, Quinlan EM. (2007) Experience-dependent recovery of vision following life-long deprivation amblyopia. Nat. Neurosci. 10: 1134-6.
  • He HY, Hodos W, Quinlan EM.  (2006) Visual deprivation reactivates rapid ocular dominance plasticity in adult visual cortex. J. Neurosci. 26: 2951-5.
  • He HY, Rasmusson DD, Quinlan EM. (2004) Progressive elevations in AMPA and GABAA receptor levels in deafferented somatosensory cortex. J. Neurochem. 90: 1186-1193.